Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Investigating the Aggregation and Prionogenic Properties of Human Cancer-Related Proteins.
Goncharoff D, Du Z, Venkatesan S, Cho B, Zhao J, Alasady MJ, Huey D, Ma H, Rosenthal J, Turenitsa A, Feldman C, Halfmann R, Mendillo ML, Li L. Mol Cell Biol. 2025:1-15.
Complete sequencing of ape genomes
Yoo D, Rhie A, Hebbar P, Antonacci F, Logsdon GA, Solar SJ, Antipov D, Pickett BD, Safonova Y, Montinaro F, Luo Y, Malukiewicz J, Storer JM, Lin J, Sequeira AN, Mangan RJ, Hickey G, Monfort Anez G, Balachandran P, Bankevich A, Beck CR, Biddanda A, Borchers M, Bouffard GG, Brannan E, Brooks SY, Carbone L, Carrel L, Chan AP, Crawford J, Diekhans M, Engelbrecht E, Feschotte C, Formenti G, Garcia GH, de Gennaro L, Gilbert D, Green RE, Guarracino A, Gupta I, Haddad D, Han J, Harris RS, Hartley GA, Harvey WT, Hiller M, Hoekzema K, Houck ML, Jeong H, Kamali K, Kellis M, Kille B, Lee C, Lee Y, Lees W, Lewis AP, Li Q, Loftus M, Loh YHE, Loucks H, Ma J, Mao Y, Martinez JFI, Masterson P, McCoy RC, McGrath B, McKinney S, Meyer BS, Miga KH, Mohanty SK, Munson KM, Pal K, Pennell M, Pevzner PA, Porubsky D, Potapova T, Ringeling FR, Rocha JL, Ryder OA, Sacco S, Saha S, Sasaki T, Schatz MC, Schork NJ, Shanks C, Smeds L, Son DR, Steiner C, Sweeten AP, Tassia MG, Thibaud-Nissen F, Torres-Gonzalez E, Trivedi M, Wei W, Wertz J, Yang M, Zhang P, Zhang S, Zhang Y, Zhang Z, Zhao SA, Zhu Y, Jarvis ED, Gerton JL, Rivas-Gonzalez I, Paten B, Szpiech ZA, Huber CD, Lenz TL, Konkel MK, Yi SV, Canzar S, Watson CT, Sudmant PH, Molloy E, Garrison E, Lowe CB, Ventura M, O'Neill RJ, Koren S, Makova KD, Phillippy AM, Eichler EE. Nature 2025.
Highly Optimized Simulation of Atomic Resolution Cell-Like Protein Environment
Tytarenko AM, Singh A, Ambati VK, Copeland MM, Kundrotas PJ, Halfmann R, Kasyanov PO, Feinberg EA, Vakser IA. J Phys Chem B. 2025;129:3183-3190.
Enhanced RNA-targeting CRISPR-Cas technology in zebrafish
Moreno-Sanchez I, Hernandez-Huertas L, Nahon-Cano D, Martinez-Garcia PM, Treichel AJ, Gomez-Marin C, Tomas-Gallardo L, da Silva Pescador G, Kushawah G, Egidy R, Perera A, Diaz-Moscoso A, Cano-Ruiz A, Walker JA, 2nd, Munoz MJ, Holden K, Galceran J, Nieto MA, Bazzini AA, Moreno-Mateos MA. Nat Commun. 2025;16:2591.
DCLK1-mediated regulation of invadopodia dynamics and matrix metalloproteinase trafficking drives invasive progression in head and neck squamous cell carcinoma
Arnold L, Yap M, Farrokhian N, Jackson L, Barry M, Ly T, Arjunan P, Kaczorowski-Worthley A, Tews C, Pandey A, Morrison A, Washburn MP, Standing D, Gomez JP, Yellapu NK, Johnson D, Li L, Umar S, Anant S, Thomas SM. Mol Cancer. 2025;24:50.
SNORD113–114 cluster maintains haematopoietic stem cell self-renewal via orchestrating the translation machinery
Wang H, Zhang Z, Han C, Jiang P, Xu J, Han Y, Huang D, Li J, Zhou J, Durnin M, Chen S, Liu Y, Sheng J, Cao J, Liu J, Liu B, Yu J, Wang F, Qian P. Nat Cell Biol. 2025;27:246-261.
Cell extrusion drives neural crest cell delamination.
Moore Zajic EL, Zhao R, McKinney MC, Yi K, Wood C, Trainor PA. Proc Natl Acad Sci U S A. 2025;122:e2416566122 doi: 10.1073/pnas.2416566122.
Oogenesis involves a novel nuclear envelop remodeling mechanism in Schmidtea mediterranea
Guo L, Guo F, Zhang S, Zeng A, Yi K, McClain M, Kuhn CD, Parmely T, Sanchez Alvarado A. Dev Biol. 2025;520:13-20.
Patterns of crossover distribution in Drosophila mauritiana necessitate a re-thinking of the centromere effect on crossing over
Hawley RS, Price A, Li H, Jagannathan M, Staber C, Hughes SE, Williams S, Perera A, Egidy RR, Lawlor A, Miller DE, Blumenstiel JP. Genetics 2024.
Comparative analysis of neural crest development in chick and mouse
Morrison JA, Pushel I, McLennan R, McKinney MC, Gogol MM, Scott A, Krumlauf R, Kulesa PM. Dev Biol. 2024;519:142-149.
Optimized smFISH Pipeline for Studying NascentTranscription in Mouse Embryonic Tissue Samples
Afzal Z, Krumlauf R. Methods Mol Biol. 2025;2889:53-66.
Real-time imaging reveals a role for macrophage protrusive motility in melanoma invasion
Ramakrishnan G, Miskolci V, Hunter M, Giese MA, Munch D, Hou Y, Eliceiri KW, Lasarev MR, White RM, Huttenlocher A. J Cell Biol. 2025;224.
Interpreting regulatory mechanisms of Hippo signaling through a deep learning sequence model
Dalal K, McAnany C, Weilert M, McKinney MC, Krueger S, Zeitlinger J. Cell Genom. 2025:100821.
Signalling by co-operative higher-order assembly formation: linking evidence at molecular and cellular levels
Kobe B, Nanson JD, Hoad M, Blumenthal A, Gambin Y, Sierecki E, Stacey KJ, Ve T, Halfmann R. Biochem J. 2025;482:275-294.
The Society for Craniofacial Genetics and Developmental Biology 47th Annual Meeting
Trainor PA, Cox TC, Clouthier DE, Fantauzzo KA, Harris MP, Jeong J, Stottmann RW, Merrill AE. Am J Med Genet A. 2025:e64059.
